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Start with a good description of your modelling procedure. An example is given in the Stepwise approach part of the manual. A demonstration of a simple application of HABITAT is given in a set of videos in the chapter 03 3 - (Video)Tutorials
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For this purpose you may use the table reclassification with multiple grids. Enter the input file names and file path and enter the classification table. An example is given at the description of the model type.
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