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FAST
FAST is a two-dimensional model for tsunami calculations.
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This page describes the FAST module adapter, its functions, and provides an example for configuring a FAST run in FEWS. It only has a pre adapter since
FAST
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FAST adapter
Model adapter for running a FAST model from Delft-FEWS.
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- For all files that are written by this adapter, if the file to be written already exists, then it will be overwritten.
- This program writes log messages to log file called Fast_Pre_Adapter.log.
- This program uses the information in the specified netcdf run file as input and uses this information to do the following:
- Replace the tag $WAVE_HEIGHT$ in template file (cil0_30mv3_TEMPLATE.xyz) with a wave height value from the exported netcdf file from FEWS.
FastPostAdapter
- For all files that are written by this adapter, if the file to be written already exists, then it will be overwritten.
- This program writes log messages to log file called Fast_Post_Adapter.log.
- Converts model output (cil0_30mv3_out.asc) in esri grid format to fews netcdf grid format for T0.
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- The model needs Matlab Compiler runtime 2013b x64 v8.2 to be installed
- This program The adapter needs Java version 1.7 or higher.
- This program The adapter needs the following Java libraries:
- castor-0.9.5.jar
- commons-httpclient-3.0.1.jar
- Delft_Util.jar
- fews-FAST-adapter.jar
- log4j-1.2.14.jar
- netcdf-4.2.jar
- slf4j-api-1.5.6.jar
- slf4j-log4j12-1.5.6.jar
- xercesImpl.jar
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<startUpActivities>
<purgeActivity>
<filter>workDir*</filter>
</purgeActivity>
</startUpActivities>
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The first steps in the general adapter run are the data set, netcdf and run file export activities. The <exportDataSetActivity> will extract a zip file with the module instance id as file name located in "Config\ModuleDataSetFiles\" of the FEWS environment to the workdir. The <exportNetcdfActivity> will be a netcdf file which can have any name containing a variable called wave_height which has exactly one value. The <exportNetcdfRunFileActivity> will be a netcdf run file that contains information needed by the pre adapter. The information will be automatically filled by the general adapter.
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<exportActivities>
<exportDataSetActivity>
<moduleInstanceId>Run_FAST</moduleInstanceId>
</exportDataSetActivity>
<exportNetcdfActivity>
<exportFile>wave_height.nc</exportFile>
<timeSeriesSets>
<timeSeriesSet>
<moduleInstanceId>Run_FAST</moduleInstanceId>
<valueType>scalar</valueType>
<parameterId>WaveHeight</parameterId>
<locationId>Dummy</locationId>
<timeSeriesType>external historical</timeSeriesType>
<timeStep unit="hour"/>
<relativeViewPeriod unit="hour" start="0" end="0"/>
<readWriteMode>add originals</readWriteMode>
</timeSeriesSet>
</timeSeriesSets>
</exportNetcdfActivity>
<exportNetcdfRunFileActivity>
<description>This run file is passed as argument to FastPreAdapter</description>
<exportFile>run.nc</exportFile>
</exportNetcdfRunFileActivity>
</exportActivities>
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The next steps are the execute activities.
The first will be the pre adapter. This program will read the run.nc input file and use the contents for instructions on which directory and files should be used to convert to the correct FAST input format. The Pre adapter generates a log file called fast_ pre _ adapter. log, which can be read into FEWS by coupling line patterns to FEWS log messages.
The second execute activity will be the module run.
The third execute activity will be the post adapter.
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<executeActivities>
<executeActivity>
<command>
<className>nl.deltares.fast.FastPreAdapter</className>
<binDir>adapter\bin</binDir>
</command>
<arguments>
<argument>run.nc</argument>
</arguments>
<logFile>
<file>Fast_Pre_Adapter.log</file>
<errorLinePattern>ERROR*</errorLinePattern>
<warningLinePattern>WARN*</warningLinePattern>
<infoLinePattern>INFO*</infoLinePattern>
<debugLinePattern>DEBUG*</debugLinePattern>
</logFile>
<timeOut>99999999</timeOut>
<ignoreDiagnostics>true</ignoreDiagnostics>
</executeActivity>
<executeActivity>
<command>
<executable>FASTrun.exe</executable>
</command>
<arguments>
<argument>cil0b2</argument>
<argument>cil0_30mv3</argument>
</arguments>
<timeOut>99999999</timeOut>
<ignoreDiagnostics>true</ignoreDiagnostics>
</executeActivity>
<executeActivity>
<command>
<className>nl.deltares.fast.FastPostAdapter</className>
<binDir>adapter\bin</binDir>
</command>
<arguments>
<argument>run.nc</argument>
</arguments>
<logFile>
<file>Fast_Post_Adapter.log</file>
<errorLinePattern>ERROR*</errorLinePattern>
<warningLinePattern>WARN*</warningLinePattern>
<infoLinePattern>INFO*</infoLinePattern>
<debugLinePattern>DEBUG*</debugLinePattern>
</logFile>
<timeOut>99999999</timeOut>
<ignoreDiagnostics>true</ignoreDiagnostics>
</executeActivity>
</executeActivities>
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Wave height input file
Executing pre adapter
This program will read the run.nc input file and use the contents for instructions on which directory and files should be used to convert to the correct FAST input format.
The Pre adapter generates a log file called fast_pre_adapter.log, which can be read into FEWS by coupling line patterns to FEWS log messages.
It uses the exported netcdf file to look for the latest non missing value of the wave height to write Th exported netcdf file with the wave height will be used to write the wave height to cil0_30mv3.xyz by replacing the tag $WAVE_HEIGHT$ in cil0_30mv3_TEMPLATE.xyz:
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108.34958333 -7.83289859 $WAVE_HEIGHT$ 900 1
108.35411600 -7.83289136 $WAVE_HEIGHT$ 900 1
108.35859257 -7.83344007 $WAVE_HEIGHT$ 900 1
108.36302258 -7.83258101 $WAVE_HEIGHT$ 900 1
108.36729527 -7.83112279 $WAVE_HEIGHT$ 900 1
108.37134559 -7.82910962 $WAVE_HEIGHT$ 900 1
108.37528703 -7.82689069 $WAVE_HEIGHT$ 900 1
108.37936617 -7.82496548 $WAVE_HEIGHT$ 900 1
108.38335489 -7.82662508 $WAVE_HEIGHT$ 900 1
108.38745431 -7.82846972 $WAVE_HEIGHT$ 900 1
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108.34958333 -7.83289859 5.00 900 1
108.35411600 -7.83289136 5.00 900 1
108.35859257 -7.83344007 5.00 900 1
108.36302258 -7.83258101 5.00 900 1
108.36729527 -7.83112279 5.00 900 1
108.37134559 -7.82910962 5.00 900 1
108.37528703 -7.82689069 5.00 900 1
108.37936617 -7.82496548 5.00 900 1
108.38335489 -7.82662508 5.00 900 1
108.38745431 -7.82846972 5.00 900 1
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Executing model run
The next activity will be executing the FAST model run. This is done by running This activity runs the model (FASTrun.exe) in the workdir containing the model files with the input file names as arguments. The model creates the output file cil0_30mv3_out.asc which contains the grid information for FEWS.
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<executeActivity>
<command>
<className>nl.deltares.fast.FastPostAdapter</className>
<binDir>adapter\bin</binDir>
</command>
<arguments>
<argument>run.nc</argument>
</arguments>
<logFile>
<file>Fast_Post_Adapter.log</file>
<errorLinePattern>ERROR*</errorLinePattern>
<warningLinePattern>WARN*</warningLinePattern>
<infoLinePattern>INFO*</infoLinePattern>
<debugLinePattern>DEBUG*</debugLinePattern>
</logFile>
<timeOut>99999999</timeOut>
<ignoreDiagnostics>true</ignoreDiagnostics>
</executeActivity>
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<importActivities>
<importNetcdfActivity>
<importFile>postAdapterOutput.nc</importFile>
<timeSeriesSets>
<timeSeriesSet>
<moduleInstanceId>Run_XBeach</moduleInstanceId>
<valueType>grid</valueType>
<parameterId>H_max</parameterId>
<locationId>Fast</locationId>
<timeSeriesType>external historical</timeSeriesType>
<timeStep unit="nonequidistant"/>
<readWriteMode>read complete forecast</readWriteMode>
</timeSeriesSet>
</timeSeriesSets>
</importNetcdfActivity>
</importActivities>
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