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SWAT Pre-adapter


SWAT Post-adapter


GeneralAdapterRun Example Configuration

General

This section specifies general information regarding the module such as version number, file directories, missing values, and time zone information.

General
	<general>
		<description>SWAT Model for $BASIN$</description>
		<piVersion>1.8</piVersion>
		<rootDir>%REGION_HOME%/Modules/SWAT/$BASIN$</rootDir>
		<workDir>%ROOT_DIR%/work-dir</workDir>
		<exportDir>%ROOT_DIR%/export-dir</exportDir>
		<exportDataSetDir>%ROOT_DIR%</exportDataSetDir>
		<exportIdMap>IdExportSWAT</exportIdMap>
		<importDir>%ROOT_DIR%/import-dir</importDir>
		<importIdMap>IdImportSWAT</importIdMap>
		<dumpFileDir>$GA_DUMPFILEDIR$</dumpFileDir>
		<dumpDir>%ROOT_DIR%</dumpDir>
		<diagnosticFile>%ROOT_DIR%/swat_adapter_log.xml</diagnosticFile>
		<missVal>-999.0</missVal>
		<timeZone>
			<timeZoneName>MST</timeZoneName>
		</timeZone>
	</general>


Start-Up Activities

This section can be used to clear data from previous runs.

Start-Up Activities
		<startUpActivities>
			<purgeActivity>
				<filter>%ROOT_DIR%/*.*</filter>
			</purgeActivity>
			<purgeActivity>
				<filter>%ROOT_DIR%/work-dir/*.*</filter>
			</purgeActivity>
			<purgeActivity>
				<filter>%ROOT_DIR%/import-dir/*.*</filter>
			</purgeActivity>
			<purgeActivity>
				<filter>%ROOT_DIR%/export-dir/*.*</filter>
			</purgeActivity>
			<purgeActivity>
				<filter>%ROOT_DIR%/TablesOut/*.*</filter>
			</purgeActivity>
			<purgeActivity>
				<filter>%ROOT_DIR%/TablesIn/*.*</filter>
			</purgeActivity>
		</startUpActivities>


Export Activities

This section specifies the data to be exported from FEWS as input to the module.

Export Activities
 		 <exportActivities>
			<exportDataSetActivity>
				<moduleInstanceId>SWAT_$BASIN$</moduleInstanceId>
			</exportDataSetActivity>
			<!--  -->
			<exportNetcdfActivity>
				<exportFile>pcp1.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessACISScalar</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PC.obs</parameterId>
						<locationId>3036086</locationId>
						<locationId>3036205</locationId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>tmp1.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessACISScalar</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>TA.obs</parameterId>
						<locationId>3036086</locationId>
						<locationId>3036205</locationId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>hmd.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessACISScalar</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>XR.obs</parameterId>
						<locationId>3036086</locationId>
						<locationId>3036205</locationId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>wnd.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessACISScalar</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>US.obs</parameterId>
						<locationId>3036086</locationId>
						<locationId>3036205</locationId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>slr.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessACISScalar_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>RW.obs.day</parameterId>
						<locationId>3036086</locationId>
						<locationId>3036205</locationId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>pet.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessSWAT</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>EA.obs</parameterId>
						<locationId>3036086</locationId>
						<locationId>3036205</locationId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<!-- WQ data exports -->
			<exportNetcdfActivity>
				<exportFile>WQ_FLOCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_SEDCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_ORGNCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_ORGPCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_NO3CNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_NH3CNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_NO2CNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_MINPCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_CBODCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_DISOXCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_CHLACNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_SOLPSTCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_SRBPSTCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_BACTPCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_BACTLPCNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_CMTL1CNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_CMTL2CNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportNetcdfActivity>
				<exportFile>WQ_CMTL3CNST.nc</exportFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>PreprocessWQ_historical</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>PTO4</parameterId>
						<locationSetId>WQ_Stations</locationSetId>
						<timeSeriesType>external historical</timeSeriesType>
						<timeStep id="day_MST"/>
						<relativeViewPeriod unit="day" end="0" startOverrulable="true"/>
						<readWriteMode>read only</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</exportNetcdfActivity>
			<exportRunFileActivity>
				<exportFile>%ROOT_DIR%/run_info.xml</exportFile>
				<properties>
					<string key="master-watershed" value="%WORK_DIR%/file.cio"/>
					<string key="schema" value="%WORK_DIR%/schema.ini"/>
					<string key="reach" value="%WORK_DIR%/output.rch"/>
					<string key="reach-output" value="%ROOT_DIR%/export-dir/reach.nc"/> 
					<string key="sediment" value="%WORK_DIR%/output.sed"/>
					<string key="sediment-output" value="%ROOT_DIR%/export-dir/sediment.nc"/> 
					<string key="subbasin" value="%WORK_DIR%/output.sub"/>
					<string key="subbasin-output" value="%ROOT_DIR%/export-dir/subbasin.nc"/> 
				</properties>
			</exportRunFileActivity>
		</exportActivities>


Execute Activities

This section calls the SWAT pre-adapter, SWAT executable, and SWAT post-adapter. Note: the run_info.xml is passed to the adapters.

Execute Activities
 		 <executeActivities>
			<executeActivity>
				<description>run SWAT preAdapter</description>
				<command>
					<className>nl.deltares.fews.swatadapter.SwatPreAdapter</className>
					<binDir>%ROOT_DIR%/binAdapter</binDir>
				</command>
				<arguments>
					<argument>%ROOT_DIR%/run_info.xml</argument>
				</arguments>
				<timeOut>300000</timeOut>
				<ignoreDiagnostics>false</ignoreDiagnostics>
			</executeActivity>
			<executeActivity>
				<description>run SWAT model</description>
				<command>
					<executable>%WORK_DIR%/swat2012.exe</executable>
				</command>
				<console>
				</console>
				<timeOut>300000</timeOut>
				<ignoreDiagnostics>true</ignoreDiagnostics>
			</executeActivity>
			<executeActivity>
				<description>run SWAT postAdapter</description>
				<command>
					<className>nl.deltares.fews.swatadapter.SwatPostAdapter</className>
					<binDir>%ROOT_DIR%/binAdapter</binDir>
				</command>
				<arguments>
					<argument>%ROOT_DIR%/run_info.xml</argument>
				</arguments>
				<timeOut>300000</timeOut>
				<ignoreDiagnostics>false</ignoreDiagnostics>
			</executeActivity>
		</executeActivities>

Import Activities

This section imports data into FEWS from the model run. Data can be imported from the reach.nc, sediment.nc, and subbasin.nc files.

Import Activities
 		 <importActivities>
			<importNetcdfActivity>
				<importFile>reach.nc</importFile>
				<timeSeriesSets>
					<timeSeriesSet>
						<moduleInstanceId>SWAT_Basin_Historic</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>QR.sim</parameterId>
						<locationId>LocationA</locationId>
						<timeSeriesType>simulated historical</timeSeriesType>
						<timeStep unit="nonequidistant"/>
						<readWriteMode>add originals</readWriteMode>
					</timeSeriesSet>
					<timeSeriesSet>
						<moduleInstanceId>SWAT_Basin_Historic</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>NO3.load</parameterId>
						<locationId>LocationA</locationId>
						<timeSeriesType>simulated historical</timeSeriesType>
						<timeStep unit="nonequidistant"/>
						<readWriteMode>add originals</readWriteMode>
					</timeSeriesSet>
					<timeSeriesSet>
						<moduleInstanceId>SWAT_Basin_Historic</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>NO3</parameterId>
						<locationId>LocationA</locationId>
						<timeSeriesType>simulated historical</timeSeriesType>
						<timeStep unit="nonequidistant"/>
						<readWriteMode>add originals</readWriteMode>
					</timeSeriesSet>
					<timeSeriesSet>
						<moduleInstanceId>SWAT_Basin_Historic</moduleInstanceId>
						<valueType>scalar</valueType>
						<parameterId>TW.sim</parameterId>
						<locationId>LocationA</locationId>
						<timeSeriesType>simulated historical</timeSeriesType>
						<timeStep unit="nonequidistant"/>
						<readWriteMode>add originals</readWriteMode>
					</timeSeriesSet>
				</timeSeriesSets>
			</importNetcdfActivity>
		</importActivities>


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